Genome Annotation for M. pneumoniae: Genes -

	Genome Annotation for M. pneumoniae: Genes -

General infos about this server

This is the current table of the M.pneumoniae genome. Note that it still contains the original genbank numbering and 677 proteins. In the meantime we have annotated another 12 protein reading frames in intergenic regions, here are the detailed data and comments on these new reading frames (there are further 4 reading frames included with in-frame stops). Furthermore, we dismissed one reading frame (MP237 in the table below, see comment there). Additionally, a list of the re-annotated RNA genes is given. Taking all this changes into account and considering that in most procaryotes gene numbers start from the origin of replication, here is the new gene numbering table . We gave new MPN numbers for each reading frame, followed by the numbering of the original publication (Himmelreich et al., 1996), old genbank numbering, PID and ORF identifier for full cross-reference of any reading frame. An overview on the reannotated M. pneumoniae genome.

This search engine is designed for the following table, and for the retrieval of genomic DNA regions, Annotators, & ZMBH entries, correspondingly.Perl's pattern-matching can be used ["\.*" for everything, "\w+" for any string, "\s+" for at least one space.]. For example, you want to find all genes whose comment contains "new", but not "new_but", you can use the following string in the search field:"new[^_]".Or you want to know how many domains are found among the MP's protein set, just enter: "\w+" [for any character in a string] for domains search.Or enter "ok" to find out OK in Func_EMBL. Or for searching against length: please use "<, <=, ==, >=, >", for example: <=100 for seq. length equal or smaller than 100 aa. Or using the format "77..3999" for search in Coding regions.
For a given DNA regions in format: "1..60" or" complement(77..3418)" the DNA sequence will be returned.
In Searching for Annotators, one can use either the author's name or Mp's name (like MP001). The ZMBH list is kindly provided by Prof. Hermann at ZMBH, HD. Please take a look at the list of ZMBH <-> Genbank comp.

Access table for the whole genome of Mycoplasma pneumoniae

Total: 677 genes
1..10  11..20  21..30  31..40  41..50  51..60  61..70  71..80  81..90  91..100
101..110  111..120  121..130  131..140  141..150  151..160  161..170  171..180  181..190  191..200
201..210  211..220  221..230  231..240  241..250  251..260  261..270  271..280  281..290  291..300
301..310  311..320  321..330  331..340  341..350  351..360  361..370  371..380  381..390  391..400
401..410  411..420  421..430  431..440  441..450  451..460  461..470  471..480  481..490  491..500
501..510  511..520  521..530  531..540  541..550  551..560  561..570  571..580  581..590  591..600
601..610  611..620  621..630  631..640  641..650  651..660  661..670  671..677

**Mycoplasma pneumoniae**
Gene	Genbank id	PID	Coding regions/[length]	Protein Function				Protein Structure Prediction			Pathway		Ortholog MG	Domains	homolog MP	Intrinsics	Comments	Gene
Gene	Genbank id	PID	Coding regions/[length]	Genbank	Koonin	TIGR	EMBL	Cothia	EMBL	Other	TIGR	EMBL	Ortholog MG	Domains	homolog MP	Intrinsics	Comments	Gene
MP001	E07_orf1113 Z	g1673646	complement(77..3418)/ [1113]	MG140 homolog, from M. genitalium			conserved hypothetical, MG140 homolog, from M. genitalium			RN153			MG140			lc: 958..970 1003..1016;		MP001
MP002	E07_orf794 Z	g1673647	complement(3594..5978)/ [794]	putative lipoprotein, MG260 homolog, from M. genitalium			conserved hypothetical, see: MP631			RN152					MP007, MP008, MP056, MP057, MP336, MP430, MP472, MP473, MP547, MP551, MP553, MP554, MP631, MP632,	sp: 1..27; lc: 39..52 229..244 472..501;	less, see comments to MP631. 2D-Gel data from ZMBH, 17kD, Ges., IEP ca. 10 ?	MP002
MP003	E07_orf133 Z	g1673648	complement(6261..6662)/ [133]	E07_orf133 Protein			hypothetical see: MP141			RN151					MP003 MP009, MP015, MP016, MP017, MP024, MP027, MP050, MP054 MP060,MP116, MP141,MP144, MP187, MP318, MP338, MP342, MP428, MP468, MP492, MP548, MP552, MP627		URF; but exp: RNA data from ZMBH, RNA-expressed;	MP003
MP004	E07_orf224 Z	g1673649	complement(7145..7819)/ [224]	hypothetical 130K protein homolog; similar to GenBank Accession Number JS0069, from M. pneumoniae			new_conf, see: MP012			RN150					MP012, MP052, MP061, MP339, MP377, MP426, MP469,		but exp: RNA data from ZMBH, RNA-expressed;	MP004
MP005	E07_orf434 Z	g1673650	complement(7647..8951)/ [434]	hypothetical 130K protein homolog; similar to GenBank Accession Number JS0069, from M. pneumoniae			new_conf, see: MP012			RN149					MP012, MP052, MP062, MP339, MP377, MP426, MP469, MP470,	lc: 70..86;	but exp: RNA data from ZMBH, RNA-expressed;	MP005
MP006	E07_orf140 Z	g1673652	complement(9504..9926)/ [140]	E07_orf140 Protein			conserved hypothetical, see: MP199			RN148					MP142, MP143, MP193, MP337, MP375, MP427, MP467, MP563,			MP006
MP007	E07_orf485 Z	g1673653	complement(10469..11926)/ [485]	MG260 homolog, from M. genitalium			conserved hypothetical, see: MP631			RN147					MP002, MP056, MP057, MP336, MP430, MP472, MP547, MP551, MP553, MP554, MP631, MP632,	lc: 155..174;	see comments to MP631.	MP007
MP008	E07_orf265 Z	g1673654	complement(11933..12730)/ [265]	MG260 homolog, from M. genitalium			conserved hypothetical, see: MP631			RN146					MP002, MP057, MP336, MP430, MP472, MP473, MP547, MP551, MP554, MP631, MP632,		see comments to MP631.	MP008
MP009	E07_orf179 Z	g1673655	complement(13048..13587)/ [179]	E07_orf179 Protein			hypothetical see: MP141			RN145					MP003 MP009, MP015, MP016, MP017, MP024, MP027, MP050, MP054 MP060,MP116, MP141,MP144, MP187, MP318, MP338, MP342, MP428, MP468, MP492, MP548, MP552, MP627	cc: 152..178; lc: 58..71;	URF, but exp: RNA data from ZMBH, RNA-expressed;	MP009
MP010	E07_orf413 Z	g1673656	complement(13939..15180)/ [413]	ADP1_MYCPN adhesin P1 precursor homolog; similar to Swiss-Prot Accession Number P11311, from M. pneumoniae			conf, see: MP013			RN144					MP013, MP022, MP023, MP055, MP343, MP373, MP429, MP466, MP549, MP628, MP629,	lc: 43..55 264..284 303..318 375..401;		MP010
Gene	Genbank id	PID	Coding regions/[length]	Genbank	Koonin	TIGR	EMBL	Cothia	EMBL	Other	TIGR	EMBL	Ortholog MG	Domains	homolog MP	Intrinsics	Comments	Gene
Gene	Genbank id	PID	Coding regions/[length]	Protein Function				Protein Structure Prediction			Pathway		Ortholog MG	Domains	homolog MP	Intrinsics	Comments	Gene

Statistics

					Yuan@EMBL	[Aug.1998,Mar.1999]

The time now is: Fri Mar 19 00:50:05 2010